Sunday, October 28, 2012

Lab 9

Fluorescence microscopy and protein localization; continuation of Neurospora genetics (screening progeny)

Purpose

The purpose of this laboratory exercise on October 24, 2012, was to 1) screen progeny from Neurospora crassa crosses initiated during Lab 5 on September 26, 2012, by picking individual mature ascospores and inoculating slants containing Vogel's minimal medium, 2) observe localization of green fluorescent protein (GFP) fusions with nuclei, actin, tubulin and Mak-2 in growing hyphae of N. crassa strains using fluorescence microscopy, 3) learn about a Fungal Genetics Stock Center website, and 4) observe basidia, basidiospores, clamp connections and Buller's drop in a field-collected mushroom (Chlorophyllum sp.).

Materials and Methods

N. crassa SMRP10 x CSP-1-GFP
Chlorophyllum sp. mushroom
Prepared slants of Vogel's minimal medium
Prepared 4% water agar medium
Platinum-iridium spore picker
Scalpel
Metal inoculation loop
Microscope slides
Cover slips
Sterile water
Dropper bottle with water
Bunsen burner
Metal striker
4 degrees Celsius incubator
65 degrees Celsius water bath 
Canon PowerShot SD550 digital camera
Olympus SZ30 zoom stereo microscope 
Olympus
CX31 compound microscope
Fluorescence microscope

A. Screening of Neurospora progeny

A scalpel was used to cut a block from prepared 4% water agar (WA) medium (Figure 1 below). The block was placed on a microscope slide. A flame-sterilized metal inoculation loop was dipped in sterile water and then used to transfer ascospores from the culture dish lid of the N. crassa SMRP10 x CSP-1-GFP cross (refer to Labs 5 and 8 in my blog) to the WA block. The cross had been incubated for a week under continuous fluorescent lighting to facilitate maturation of perithecia and release of ascospores. A flame-sterilized platinum-iridium spore picker was then used (while viewing with a dissecting microscope) to cut an ~ 0.2 mm square containing an individual ascospore from the WA block and transfer it to a culture tube containing Vogel's minimal medium (Figure 2 below). A total of four ascospores were transferred to slants. The inoculated slants were placed overnight in a 4 degrees Celsius incubator to allow the spores to hydrate. The slants were then placed in a 65 degrees Celsius water bath for 45 minutes (heat shock) to kill any vegetative tissue and permit germination of the spores.

Figure 1
Figure 2
B. Fluorescence microscopy of GFP localizations

N. crassa strains were observed for GFP localization via fluorescence microscopy in Dr. Brian Shaw's lab. Five-second movies were recorded of growing hyphae (Figures 5 and 6 in Results).

C. Fungal Genetics Stock Center

Following is the link to the Fungal Genetics Stock Center website: http://www.fgsc.net/ 

Founded in 1960 at Dartmouth College, the Fungal Genetics Stock Center (FGSC) is a resource available to fungal genetics researchers that is funded mostly by a grant from the National Science Foundation of the United States of America and to a lesser extent by payments made by researchers who use its services. The FGSC was established to preserve strains of importance in genetics research. There were approximately 400 strains at the FGSC in 1960. Today the center maintains more than 19,000 Neurospora strains, a growing number of Neurospora knockouts, more than 2,000 Aspergillus strains and various representatives of other fungi. The FGSC also has cloned genes and gene libraries. Magnaporthe grisea strains and the molecular tools to work with them were added in 2001. Nearly 50,000 Magnaporthe knockout mutants were accepted in 2003 and 2004. The FGSC began to distribute arrayed sets of knockout mutants of Cryptococcus and Candida mutants in 2005.  For more information, see McCluskey, K., Wiest, A. and Plamann, M. 2010. The Fungal Genetics Stock Center: a repository for 50 years of fungal genetics research. J Biosci. 35(1):119-26.
 
D. Observation of fungal structures of Chlorophyllum sp. 

Co-laboratory instructor Dr. Brian Shaw brought in a mushroom (Chlorophyllum sp.) he collected from his residence (Figure 3 below). We were instructed to remove a portion of the mushroom's hymenium (on the vertical face of the gill) (Figure 4 below) and microscopically examine it for basidia, basidiospores, hyphal clamp connections and Buller's drop. I used a scalpel to remove one of the mushroom gills and to cut a small section of tissue from the stem. I then placed the gill and stem section in drops of water on microscope slides and covered them with cover slips. I observed fungal structures using a compound microscope. Photographs were taken through the eyepiece of the microscope using a digital camera.
 
Figure 3
Figure 4
Results

B. Fluorescence microscopy of GFP localizations

 
Figure 5
 
Figure 6

D. Observation of fungal structures of Chlorophyllum sp.
Basidiospores at 40X. Photograph cropped and enlarged to show detail.
Basidiospores still attached to basidia (40X). Buller's drops may be present in this sample. Notice two basidiospores seem to be leaning to the side. Photograph cropped and enlarged to show detail.
Basidium with four basidiospores still attached (40X). Photograph cropped and enlarged to show detail.
The stem of the mushroom is comprised of strands of hyphae (40X). No clamp connections were observed in this sample. Photograph cropped and enlarged to show detail.
Discussion 

Picking ascospores can be frustrating for a novice (ME!). I do not know whether the ascospores from the N. crassa SMRP10 x CSP-1-GFP cross germinated, as the slants were not returned to a subsequent laboratory for observation.
Below is a figure to define Buller's drop and its role in dispersal of basidiospores.



Fig. 1.

Figure 7. Ballistospore discharge in Basidiomycetes. (A) Section of a typical mushroom cap showing the gills and the location of the spore-bearing basidia (insert). The approximate trajectory of the spore is shown as a broken line. (B) A typical basidium with four spores. (C) Structure of the lower half of the spore (based on McLaughlin et al. 1985). (D) Spore ejection in Auricularia auricula. In this species, spores are borne singly on the sporogenic surfaces. (E) Diagrammatic representation of the ejection in D. http://jeb.biologists.org/content/212/17/2835.full

Lab 8

Continuation of Neurospora crassa genetics

Purpose

The objectives of this laboratory exercise on October 17, 2012, were to 1) pick perithecia from Neurospora crassa crosses initiated during Lab 5 on September 26, 2012, and squash them to observe asci and ascospores, and 2) observe field-collected mushrooms.

Materials and Methods 

N. crassa SMRP10 x CSP-1-GFP
Field-collected mushrooms
Microscope slides
Cover slips
Dissecting needle
Dropper bottle with water 
Spray bottle with 70% ethanol
Paper towels
Metal striker
Bunsen burner
Canon PowerShot SD550 digital camera
Olympus SZ30 zoom stereo microscope 
Olympus CX31 compound microscope 

A. N. crassa cross 

While observing a N. crassa SMRP10 x CSP-1-GFP cross under a dissecting microscope, and using a sterile technique (described in my blog for Lab 2 on September 5, 2012), a dissecting needle was used to pick several mature perithecia. The perithecia were placed in a drop of water on a microscope slide. A cover slip was applied and then gently pressed with the handle of the dissecting needle to squash the perithecia and release asci containing ascospores. Fungal structures were observed using a dissecting microscope and a compound microscope that had been set to Köhler according to instructions also received during Lab 2. Photographs were taken through the eyepiece of the microscope using a digital camera. Ascospores with nuclei expressing green fluorescent protein (GFP) also were observed using fluorescence microscopy.

B. Field-collected mushrooms 

A number of field-collected mushrooms that are part of a Department of Plant Pathology and Microbiology collection at Texas A&M University were made available for macroscopic observation. 

Results

A. N. crassa cross

Three-week-old N. crassa SMRP10 x CSP-1-GFP cross used to pick perithecia.
Mature perithecia that were ready to shoot ascospores, as observed using a dissecting microscope (4X). Photograph cropped and enlarged to show detail.
A group of four football-shaped ascospores that were shot from perithecia onto the lid of the culture dish, as observed using a dissecting microscope (4X). Photograph cropped and enlarged to show detail.
Two squashed perithecia released asci containing ascospores, as observed using a compound microscope (10X). Photograph cropped and enlarged to show detail. Each ascus contained eight ascospores.
Using fluorescence microscopy, multiple nuclei expressing GFP could be observed in four of the eight ascospores in this ascus from the N. crassa SMRP10 x CSP-1-GFP cross. Photograph cropped and enlarged to show detail. Nuclei in all eight ascospores should have expressed GFP. It is not known why the nuclei in only half of the ascospores expressed GFP.
B. Field-collected mushrooms 


Lab 7

Laboratory practical examination

Knowledge gained during the first six laboratory exercises was put to the test during a laboratory practical on October 10, 2012. Those who took the time to document and understand what was observed and taught during labs should have done well.

Wednesday, October 10, 2012

Lab 4 update

Ustilago maydis

Using a pair of scissors in my lab supply kit, on October 9, 2012, I excised a leaf from my corn seedling showing symptoms of infection from inoculation with Ustilago maydis on September 26, 2012. I placed the leaf in a Petri dish and covered it with a 2:1 ethanol:acetic acid solution to remove the chlorophyll. Approximately 30 hours later, I drained the 2:1 ethanol:acetic acid solution from the plate and triple rinsed the leaf with non-sterile deionized water. I patted the leaf dry with a paper towel and then covered it with 0.1% trypan blue in lactophenol to stain any fungal structures that may be present. Approximately two hours later I rinsed the leaf with non-sterile deionized water, patted it dry with a paper towel and then mounted it in lactophenol on a microscope slide for viewing using an Olympus CX31 compound microscope. I took photographs through the eyepiece of the microscope using a Canon PowerShot SD550 digital camera. Photographs were cropped and enlarged on a computer to show detail.
Conjugation of sporidia to produce dikaryotic hyphae that are necessary to infect the corn seedling.
Dikaryotic hyphae that appear to be invading the corn seedling via the stomata.
A budding sporidium.
Conjugating sporidia.
Yeast-like sporidia.

Monday, October 8, 2012

Lab 6

A survey of mitosporic fungi

Purpose
The purpose of this laboratory exercise on October 3, 2012, was to practice microscopic techniques to examine conidiating fungi.

Materials and Methods

Prepared cultures of various Ascomycetes and Basidiomycetes
Microscope slides
Cover slips
Scalpel
Dropper bottle with water
Spray bottle with 70% ethanol
Paper towels
Metal striker
Bunsen burner 
Canon PowerShot SD550 digital camera
Olympus CX31 compound microscope

Using a sterile technique (described in the report from the laboratory on September 5, 2012, that is posted in my blog), a scalpel was used to cut ~1-2 mm square plugs from prepared cultures of Monilinia fructicola, Trichoderma viride, Colletotrichum coccodes, Botrytis cinerea, Curvularia sp., Epicoccum sp., Alternaria brassicicola, Pestalotia sp., Aspergillus niger, Nigrospora sp., Thielaviopsis basicola, Rhizoctonia solani and Fusarium graminearum. Each plug was placed into a drop of water on a microscope slide, and then each plug was covered with a cover slip and viewed at 4X, 10X and 40X magnification using an Olympus CX31 compound microscope that had been set to Köhler according to instructions also received during Lab 2. Photographs of fungal hyphae and conidia were taken through the eyepiece of the microscope using a Canon PowerShot SD550 digital camera. Photographs also were taken of each plated culture. 

Results

M. fructicola
Lots of white aerial hyphae.
Hyphae are light brown on bottom of culture.
Oval or lemon-shaped conidia (40X). Photograph cropped and enlarged to show detail.
Chains of oval or lemon-shaped conidia (40X). Photograph cropped and enlarged to show detail.
 T. viride
Very distinctive blackish green radial pattern of growth.
Bottom of culture is a light olive green color.
Branched conidophores bear phialides singly or in groups. Small, hyaline single-celled conidia (40X). Photograph cropped and enlarged to show detail.
Chlamydospores (40X). Photograph cropped and enlarged to show detail.
C. coccodes
Distinctive salmon-colored concentric ring pattern. Plate contaminated in center.
Nice color and pattern on bottom of culture.




Elongated hyaline conidia with pointed to rounded ends (40X). Conidia are produced from phialides. Photograph cropped and enlarged to show detail.
Elongated, hyaline, pointed to rounded end conidia (40X). Photograph cropped and enlarged to show detail.
 B. cinerea
Lots of greenish grey aerial hyphae.

Abundant hyaline conidia borne on grey, tree-like branching conidiophores (40X). Photograph cropped and enlarged to show detail.
 Curvularia sp.
Very flat, black radial pattern. Not much aerial hyphae.

Brown, slightly curved poroconidia have an expanded third cell from the pore end of the conidium (40X). Photograph cropped and enlarged to show detail.
 Epicoccum sp.
Black fuzzy colony forms concentric rings and a strong yellow to orange-brown diffusable pigment that discolored the medium.

Multicelled, darkly pigmented conidia are globose pyriform with a funnel-shaped base and and broad attachment scar (40X). Photograph cropped and enlarged to show detail.
 A. brassicicola
Very distinctive, uniform, black concentric ring pattern.

Darkly pigmented muriform conidia (40X). Photograph cropped and enlarged to show detail.
 Pestalotia sp.
Very distinctive brownish black radial pattern with lots of aerial hyphae in the center.
Nice radial pattern on bottom of culture.




Four- to five-celled conidia, with the two or three central cells dark brown, and with two or more apical appendages (40X). Photograph cropped and enlarged to show detail.
  A. niger
Patchy black colony.
Globose, dark brown, biseriate conidial head atop a smooth-walled, hyaline conidiophore (40X). Conidia are globose to subglobose, dark brown to black and rough walled. Photograph taken during a previous laboratory excercise (see Lab 2 report in my blog) and enlarged to show detail.
 Nigrospora sp.
Culture likely contaminated.

Not conidia of Nigrospora sp. (40X). Photograph cropped and enlarged to show detail.

These are the correct conidia produced by Nigrospora sp. Conidiogenous cells on hyaline or slightly pigmented conidiophores are inflated, swollen and ampulliform in shape, and bear a single conidium at the apex. Single-celled conidia are black, smooth and slightly flattened horizontally, and have a thin equatorial germ slit. http://www.emlab.com/s/sampling/env-report-04-2006.html

T. basicola
Distinctive blackish, circular, radial colony with notched edges.
Two types of conidia: darkly pigmented multicelled aleuriospores that arise directly from hyphae, and single-celled, thin-walled, hyaline endospores that arise from the tip of a phialide (40X). Photograph cropped and enlarged to show detail.
Enlargement of lower right corner of above photograph.
 R. solani
Dark brown, flat, radial growth with no aerial hyphae.

This species does not produce conidia and is identifiable through distinct mycelial characteristics, which include wide multinucleate hyphae that branch at right angles, and a slight constriction and septum near each hyphal junction. Mycelia are colorless when young but turn yellowish, or light or dark brown with age.
F. graminearum
Lots of white and light brown fuzzy aerial hyphae.
Nice reddish brown, non-uniform, concentric ring pattern.
Conidia in reddish gelatinous matrix (4X). Photograph cropped and enlarged to show detail.
Multicelled crescent-shaped conidia (40X). Photograph cropped and enlarged to show detail.
 Discussion

All of the fungal species examined were Ascomycetes except for R. solani, which is a Basidiomycete. R. solani also was the only species examined that does not produce conidia. Both the C. coccodes and Nigrospora sp. cultures were contaminated. C. coccodes was contaminated in the center of the plate with a light green colored fungus, which may have been a species of Aspergillus or Penicillium. I did not attempt to find out, but I did see smaller, ovoid conidia amongst the C. coccodes conidia. The conidia I observed from the Nigrospora sp. culture also were not correct. Again, I did not attempt to identify the conidia, which appeared to be binucleate. Thus, I found a photograph from the internet, showing correct conidia, to post in this blog.

It goes without saying that morphology of cultures and fungal structures among the Ascomycetes is varied and sometimes unique. Such variability can be diagnostic. Species of fungi observed during this laboratory exercise were easier to distinguish macroscopically and microscopically than the Aspergillus species observed during the laboratory exercise on September 12, 2012 (see Lab 3 report in my blog). We learned during laboratory exercise that fungi need cycles of light and dark to sporulate. Fungal growth that creates concentric rings in solid media, such as that observed for C. coccodes, Epicoccum sp., A. brassicicola, Pestalotia sp. and F. graminearum, may be due to a circadian rhythm.